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Abhinash Sarkar had slipped from his father's scooter and fell into the open drain on Thursday evening.
A classmate of the accused alleged that the teacher had reprimanded the student earlier in the day.
So far, 52 people have been killed in this year's flood while 12 others were killed in landslides and storms.
The dead animals include four rhinos and 94 hog deer due to drowning in the KNP and 11 others during treatment.
No fresh casualty, however, was reported due to the floods, with the number of people losing lives only due to the deluge remaining at 52.
At least 13 major rivers, including the Brahmaputra, are flowing above the danger level at different places, with alert for heavy to very heavy rainfall in several districts, an official bulletin said.
The injuries point towards strangulation using a shawl, said police.
The accused, Touseef Ali Farooqui, who is a 4th-year student of Bioscience, was detained on Saturday.
The 'Made in India' semiconductor chips will take the country towards self-reliance and modernity, PM said.
Protests erupted in Assam on Monday night, hours after the Centre announced the CAA notification.