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Various parts of Myanmar, Laos, and Vietnam have been reeling under massive floods after Typhoon Yagi, which is said to be Asia's most powerful storm this year, hit the three countries.
The IMD has forecast isolated showers in seven districts - almost all of them in northern Kerala. The seven districts are Thrissur, Palakkad, Malappuram, Kozhikode, Wayanad, Kannur and Kasaragod.
The storm's heavy rain triggered deadly landslides and caused rivers to burst their banks.
Typhoon Hagibis made landfall south of Tokyo on Saturday and moved north, triggering severe floods. It has left at least 26 people dead and over 100 injured. More than a dozen people are missing.
The storm was initially designated a 'super typhoon', but weakened slightly before landfall - when it still had winds of 187km/h (116mph).
The weather agency warned the storm would rip through the nation over the weekend, bringing violent winds and torrential rain.
Parts of Hong Kong and Macau were severely flooded, though there were no immediate reports of fatalities.
Winds with a speed of 200 kph, tropical cyclone Mangkhut is considered the strongest to hit the region this year.
The tropical storm is expected to gradually wane as it keeps moving northwest at a speed of 30 km per hour, Xinhua news agency reported.